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Oktoberfest fails on Sage output with PTMs

bugSomething isn't workingSomething isn't working

Status: Open.

#376 In wilhelm-lab/oktoberfest;

· gritukan opened on Mar 23, 2026

Potential mismatch between documentation and real behavior for PTM configuration

bugSomething isn't workingSomething isn't working

Status: Open.

#375 In wilhelm-lab/oktoberfest;

· gritukan opened on Mar 23, 2026

Oktoberfest fails if spectra file contains more than one dot

bugSomething isn't workingSomething isn't working

Status: Open.

#373 In wilhelm-lab/oktoberfest;

· gritukan opened on Mar 23, 2026

Oktoberfest hangs in case of child worker OOM

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#372 In wilhelm-lab/oktoberfest;

· gritukan opened on Mar 2, 2026

Installation Error

Status: Open.

#360 In wilhelm-lab/oktoberfest;

· lliligabriel opened on Sep 28, 2025

Tutorial notebook isn't work well because of peptide column

bugSomething isn't workingSomething isn't working

Status: Open.

#358 In wilhelm-lab/oktoberfest;

· elephantoid opened on Sep 19, 2025

TMT models for spectral library generation from a fasta file

bugSomething isn't workingSomething isn't working

Status: Open.

#347 In wilhelm-lab/oktoberfest;

· fshikwana opened on Aug 3, 2025

consolidate *.hdf5 and *pred.hdf5

enhancementNew feature or requestNew feature or request

Status: Open.

#345 In wilhelm-lab/oktoberfest;

· picciama opened on Jul 21, 2025

TypeError: mokapot.read_pin() missing 1 required positional argument: 'max_workers' when rescoring with mokapot

Status: Open.

#344 In wilhelm-lab/oktoberfest;

· ab-omicscouts opened on Jul 9, 2025

Sage with TimsTOF Data Rescoring

bugSomething isn't workingSomething isn't working

Status: Open.

#314 In wilhelm-lab/oktoberfest;

· jonathan-krieger-bruker opened on Feb 21, 2025

Mokapot run prints out percolator features to original.log

bugSomething isn't workingSomething isn't working

Status: Open.

#309 In wilhelm-lab/oktoberfest;

· jlapin1 opened on Dec 20, 2024

CE calibration spectral angle violin plots show incorrectly picked max SA

bugSomething isn't workingSomething isn't working

Status: Open.

#308 In wilhelm-lab/oktoberfest;

· jlapin1 opened on Dec 20, 2024