Describe the bug
Hi, I am attempting to generate a spectral library based on a fasta file and I need the peptides to contain TMTpro modifications. I attempted to do this by modifying the tutorial provided with the models that worked for me (so Prosit_2020_intensity_TMT and Prosit_2020_irt_TMT) and including my mods. I included my notebook output but I also tried defining the mods in a different output but got the same error. I have tried this in a Google CoLab as well as Jupyter notebook on a MacOS 14.1 system as well as on Ubuntu through Jupyter notebook. I have also tried running it within a Conda environment as well as not.
For reference, I was able to get successful spectral library generation using the non TMT models.
Copy of Oktoberfest.ipynb - Colab.pdf
Thank you!
Describe the bug
Hi, I am attempting to generate a spectral library based on a fasta file and I need the peptides to contain TMTpro modifications. I attempted to do this by modifying the tutorial provided with the models that worked for me (so Prosit_2020_intensity_TMT and Prosit_2020_irt_TMT) and including my mods. I included my notebook output but I also tried defining the mods in a different output but got the same error. I have tried this in a Google CoLab as well as Jupyter notebook on a MacOS 14.1 system as well as on Ubuntu through Jupyter notebook. I have also tried running it within a Conda environment as well as not.
For reference, I was able to get successful spectral library generation using the non TMT models.
Copy of Oktoberfest.ipynb - Colab.pdf
Thank you!