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Missing CEG and NEG references: Mouse

bugSomething isn't workingSomething isn't working

Status: Open.

#53 In CCBR/CRISPIN;

· wong-nw opened on Nov 15, 2024

exp_name for all outputs

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In CCBR/CRISPIN;

· wong-nw opened on Nov 13, 2024

document basic pipeline usage

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#42 In CCBR/CRISPIN;

· kelly-sovacool opened on May 3, 2024

Refactor samplesheet based on CHAMPAGNE

enhancementNew feature or requestNew feature or request

LowPriority

Status: Open.

#41 In CCBR/CRISPIN;

· kelly-sovacool opened on May 3, 2024

Pipeline restarts even with resume flag at check_samplesheet

bugSomething isn't workingSomething isn't working

Status: Open.

#37 In CCBR/CRISPIN;

· slsevilla opened on Nov 21, 2023

add VISPR to the pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In CCBR/CRISPIN;

· slsevilla opened on Nov 21, 2023

Update libraries to follow the sgRNA ID, the sequence, the gene

bugSomething isn't workingSomething isn't working

Status: Open.

#35 In CCBR/CRISPIN;

· slsevilla opened on Nov 20, 2023

MAGeCK fails when counts matrix has an empty geneID

bugSomething isn't workingSomething isn't working

Status: Open.

#34 In CCBR/CRISPIN;

· slsevilla opened on Nov 20, 2023

automatically pull col names to be analyzed with BAGEL

bugSomething isn't workingSomething isn't working

Status: Open.

#33 In CCBR/CRISPIN;

· slsevilla opened on Nov 20, 2023

Allow for multiple pairwise comparisons, within one run

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In CCBR/CRISPIN;

· slsevilla opened on Nov 7, 2023

Check validity of parameters at start of workflow

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In CCBR/CRISPIN;

· kelly-sovacool opened on Nov 6, 2023

Implement QC

enhancementNew feature or requestNew feature or request

Status: Open.

#12 In CCBR/CRISPIN;

· kelly-sovacool opened on Sep 15, 2023