Pipeline restarts even with resume flag at check_samplesheet

[slsevilla]

Description of the bug

The pipeline is continuing to restart even with the -resume flag

Command used and terminal output

nextflow run main.nf -c nextflow.config -resume -profile biowulf,slurm

Still fails even if the -w flag has been set

nextflow run main.nf -c nextflow.config -resume -profile biowulf,slurm -w work/

It does NOT fail when resume is at the end of the line

nextflow run main.nf -c nextflow.config -profile biowulf,slurm -resume -w work/