Microhaps_mito

This pipeline classifies the Plasmodium species of a sample using mitochodrion amplicon reads.

Installation

To install the pipeline, run the following command:

"${SHELL}" <(curl -L https://raw.githubusercontent.com/vivaxgen/microhaps_mito/main/install.sh)

TO update the pipeline, run the following command (in an active microhaps_mito environment):

$VVGBIN/update-pipeline.sh

To update the pipeline, including all of its software dependencies, perform a new full installation.

Usage

[TBW]