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@vivaxgen

The vivaxGEN Project

README.rst

vivaxGEN

The vivaxGEN github repository provides the necessary tools to perform analysis on molecular surveillance data supporting the elimination of Plasmodium vivax.

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  1. ngs-pipeline ngs-pipeline Public

    vivaxGEN NGS pipeline for whole genome and targeted sequencing

    Python 2

  2. MicroHaps MicroHaps Public

    vivaxGEN Microhaplotype-calling pipeline

    Python 1

  3. G6PD_MinION G6PD_MinION Public

    Pipeline for G6PD genotyping using ONT-based amplicon assay

    Python 1

  4. sra-repo sra-repo Public

    SRA repository management system

    Python

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