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davidsebfischer and others added 30 commits January 4, 2022 16:44
…error messages

* improved query of meta data in create-dataloader
* fixed bugs in yaml templates
…ot have the same name as CLI command"

This reverts commit 1009273.
le-ander and others added 5 commits February 3, 2022 14:19
#528)

* switched data library, CLI and curation annotation to yaml version 1.2
* improved curation docs
* improved guidance in sfaira create-dataloader
* improved reaction to existing loaders
* improved data loader linting in CLI
* support for count and processed data matrices in same loader, deprecates "normalization"
* support for feature type annotation, allows for ATAC and CITE data (feature_type)
* support for based genetic modification meta data (gm)
* support for basic treatment meda data (treatment)
* support for cell tracking in meta studies (source_doi)
* support for spatial data
* support for VDJ data
* support for velocity data
* support for reference genome annotation
* support for arbirtrary organisms in genome container
@davidsebfischer davidsebfischer marked this pull request as draft February 7, 2022 13:22
@davidsebfischer davidsebfischer linked an issue Feb 7, 2022 that may be closed by this pull request
Base automatically changed from feature/cli_improvements to dev February 9, 2022 14:33
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10.1038/s41467-021-24730-4

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