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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.1k 245

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 478 113

  3. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 410 51

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 396 66

  5. scib scib Public

    Benchmarking analysis of data integration tools

    Python 395 73

  6. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 322 38

Repositories

Showing 10 of 248 repositories
  • CellFlow2 Public

    Modeling complex perturbations with CellFlow

    theislab/CellFlow2’s past year of commit activity
    Python 5 0 0 0 Updated Dec 13, 2025
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Dec 13, 2025
  • cellucid-python Public

    Tools to export data into the Cellucid web viewer’s manifest and binaries.

    theislab/cellucid-python’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2025
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 8 Apache-2.0 4 16 0 Updated Dec 12, 2025
  • huCIRA Public
    theislab/huCIRA’s past year of commit activity
    Python 3 MIT 0 1 1 Updated Dec 12, 2025
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 18 MIT 3 0 0 Updated Dec 12, 2025
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 322 Apache-2.0 38 32 (1 issue needs help) 2 Updated Dec 12, 2025
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 5 Apache-2.0 0 11 2 Updated Dec 12, 2025
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 56 BSD-3-Clause 4 7 1 Updated Dec 10, 2025
  • HumanCytokineDict Public

    Human Cytokine Dictionary

    theislab/HumanCytokineDict’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Dec 10, 2025
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