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@giovp giovp commented Mar 12, 2021

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@giovp giovp changed the base branch from master to dev March 12, 2021 14:00


def load(data_dir, sample_fn, **kwargs):
fn = os.path.join(data_dir, sample_fn)
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It looks like you are not using fn, so you can just take this line out!

import numpy as np


def load(data_dir, sample_fn, **kwargs):
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If you only have a single file, it is not necessary to use sample_fn and you can use def load(data_dir, **kwargs): instead here

@@ -0,0 +1,44 @@
dataset_structure:
dataset_index: 1
sample_fns:
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You can leave this field empty if you only have a single file name here to reduce complexity!

observation_wise:
cellontology_original_obs_key: "cell_cluster"
feature_wise:
var_ensembl_col:
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You will need to supply one of these to give some sort of gene name list.

@le-ander le-ander changed the title Tasic https://www.nature.com/articles/s41586-018-0654-5#data-availability 10_1038_s41586_018_0654_5 Feb 16, 2022
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