Conversation
When thisHit#length is equivalent and thisHit#percentID is higher than bestHit, replace bestHit with thisHit
Consider ContaminantHit#percentID in ContaminentFinder.java
Used the colours from https://davidmathlogic.com/colorblind/
Update SVG branch to current
Bring SVG into line
Bring SVG output into main
Add perl install instructions to main install.txt
Markdown updates
Add devcontainer support #158
- Implemented HtmlContentHelpers class with methods to scrub dates from strings and normalize HTML content using Jsoup.
- Added regex pattern to identify date formats (e.g., "Fri 25 Dec 2025") and replace them with a placeholder ("Mon 01 Jan 2000"). This makes the output HTML deterministic.
- Created unit tests for the scrubDates method to ensure correct functionality.
…all types of tests can use the same test data set.
…nt in the fastq files
- Added missing dependencies to the postCreateCommand in devcontainer.json. - Renamed 'quick' to 'fast' in TestCases.java for consistency. - Created a new readme.md file for tests, detailing test data usage and running instructions.
introduce unit, integration and ui tests
…hub actions Add jUnit Report
Fix github actions - Add fonts to ensure consistent experience across devcontainer and github actions
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
6 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.