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issues converting parallel_singer output to tskit trees

Status: Open.

#39 In popgenmethods/SINGER;

· h-pawar opened on Jan 20, 2026

Unexpected trend in diversity_fit_mse convergence plot

Status: Open.

#38 In popgenmethods/SINGER;

· zhangming-m opened on Jan 4, 2026

SINGER isn't coping with .vcf.gz file

Status: Open.

#34 In popgenmethods/SINGER;

· moshejasper opened on May 14, 2025

What about the ancestral stat?

Status: Open.

#33 In popgenmethods/SINGER;

· jiangzy26 opened on Apr 19, 2025

No output from compute_trace.py

Status: Open.

#31 In popgenmethods/SINGER;

· EEPuckett opened on Feb 7, 2025

Differentiating between mono-allelic sites vs missing sites

Status: Open.

#29 In popgenmethods/SINGER;

· skhalid7 opened on Jan 9, 2025

AssertionError: assert t >= min_time

Status: Open.

#27 In popgenmethods/SINGER;

· hanyou271 opened on Nov 12, 2024

Converting to tskit format: file not found

Status: Open.

#26 In popgenmethods/SINGER;

· LuisGFdez opened on Nov 8, 2024

High r/m error, branch assertion failed

Status: Open.

#25 In popgenmethods/SINGER;

· Uthara28 opened on Oct 25, 2024

Cannot find compute_pairwise_coalescence_times.py

Status: Open.

#22 In popgenmethods/SINGER;

· Luker121 opened on Sep 15, 2024

Understanding parallel singer errror

Status: Open.

#21 In popgenmethods/SINGER;

· mehakmadhura opened on Jul 18, 2024

Correspondence between nodes and individuals

Status: Open.

#16 In popgenmethods/SINGER;

· TymekPieszko opened on May 30, 2024