Cannot find compute_pairwise_coalescence_times.py

[Luker121]

There is a section in "tools" in which a compute_pairwise_coalescence_times.py script is used to calculate pairwise coalescent rates between one haplotype and the others. But there is no file called like that in any of the directories, can this be?

[YunDeng98]

Hi Lukas, Thanks for your message. It seems like I forgot to upload the file to the GitHub repo. I am traveling now and don’t have access to my laptop. I will get back to you this Friday. Sorry about that! Best, Yun

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On Sun, Sep 15, 2024 at 1:19 PM Lukas Metzger ***@***.***> wrote: There is a section in "tools" in which a compute_pairwise_coalescence_times.py script is used to calculate pairwise coalescent rates between one haplotype and the others. But there is no file called like that in any of the directories, can this be? — Reply to this email directly, view it on GitHub <#22>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ANATC4FDGM54FJVPIJADSNDZWXTVNAVCNFSM6AAAAABOIDWGLKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGUZDOMJXHE2DIOA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Luker121]

Hi,
thank you very much. Just as a side info: the compute_traces.py is also not uploaded.

[YunDeng98]

@Luker121 I believe compute_traces.py is in the SINGER/SINGER/SINGER folder, but the other function is indeed nowhere to be found. I'll reupload from my own laptop a bit later.

[YunDeng98]

@Luker121 compute_pairwise_coalescence_times.py uploaded too.