Repositories list

• SWAPS

  Public

  wilhelm-lab/SWAPS’s past year of commit activity
  Scan-Wise Activation and Peak Selection (SWAPS)

  Jupyter Notebook

  •

  MIT License

  •11 fork•99 stars•00 issues•11 pull request•Updated Apr 17, 2026Apr 17, 2026

• oktoberfest

  Public
  Rescoring and spectral library generation pipeline for proteomics.

  Python

  •

  MIT License

  •1212 forks•5555 stars•3535 issues•77 pull requests•Updated Apr 16, 2026Apr 16, 2026

• dlomix

  Public
  Python framework for Deep Learning in Proteomics

  machine-learningframeworkdeep-learning+ 4

  machine-learningframeworkdeep-learningproteomicsmass-spectrometrypeptidespeptide-sequences

  Jupyter Notebook

  •

  MIT License

  •1313 forks•4040 stars•33 issues•22 pull requests•Updated Apr 14, 2026Apr 14, 2026

• spectrum_io

  Public
  IO related functionalities for oktoberfest.

  proteomicsmass-spectrometryproteomics-data-analysis

  proteomicsmass-spectrometryproteomics-data-analysis

  Python

  •

  MIT License

  •44 forks•44 stars•11 issue•22 pull requests•Updated Apr 13, 2026Apr 13, 2026

• spectrum_fundamentals

  Public

  wilhelm-lab/spectrum_fundamentals’s past year of commit activity
  Fundamental functions, annotation pipeline and constants for oktoberfest

  proteomicsmass-spectrometry

  proteomicsmass-spectrometry

  Python

  •

  MIT License

  •22 forks•1313 stars•00 issues•55 pull requests•Updated Apr 11, 2026Apr 11, 2026

• koinar

  Public
  Koina R client

  R

  •11 fork•11 star•00 issues•11 pull request•Updated Apr 1, 2026Apr 1, 2026

• koina

  Public

  wilhelm-lab/koina’s past year of commit activity
  Democratizing ML in proteomics

  pythonmachine-learningbioinformatics+ 3

  pythonmachine-learningbioinformaticsdeep-learningproteomicsmass-spectrometry

  Jupyter Notebook

  •

  Apache License 2.0

  •2222 forks•5252 stars•77 issues•44 pull requests•Updated Mar 10, 2026Mar 10, 2026

• Prosit_multifrag

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• biowc-core

  Public
  Core plotting web components

  Vue

  •

  Apache License 2.0

  •11 fork•66 stars•22 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• rowwisenorm

  Public
  Row-wise normalization R package

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 29, 2025May 29, 2025

• dlomix-resources

  Public
  Jupyter Notebook

  •

  MIT License

  •33 forks•33 stars•00 issues•00 pull requests•Updated Jan 23, 2025Jan 23, 2025

• proteomicsdb-vue

  Public
  Vue

  •

  Apache License 2.0

  •00 forks•11 star•11 issue•00 pull requests•Updated Sep 17, 2024Sep 17, 2024

• PROSPECT

  Public
  Proteomics Mass Spectrometry Datasets for Machine Learning

  spectrummachine-learningdeep-learning+ 10

  spectrummachine-learningdeep-learningannotationsdatasetproteomicsmass-spectrometryptmpeptidesretention-time+ 3

  Python

  •

  MIT License

  •44 forks•2222 stars•00 issues•00 pull requests•Updated Aug 16, 2024Aug 16, 2024

• omics_norm_shiny

  Public
  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 13, 2023Dec 13, 2023

• protvista-proteomicsdb

  Public archive
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-components

  Public archive
  Vue

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-wrappers

  Public archive
  Vue

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-views

  Public archive
  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 30, 2023Aug 30, 2023

• prosit_grpc

  Public
  Public repo for prosit_grpc

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•66 pull requests•Updated May 11, 2023May 11, 2023