Repositories list

• SYNULATOR

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025

• GRAPE

  Public
  Python

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  MIT License

  •0•0•0•0•Updated Oct 9, 2025Oct 9, 2025

• genetic_interactions

  Public
  Software, data, and methods for analyzing genetic interaction screens in mammalian cells

  Python

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  MIT License

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• bagel

  Public
  BAGEL software

  HTML

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  MIT License

  •21•28•13•2•Updated Jan 30, 2024Jan 30, 2024

• PicklesV3

  Public
  Python/Dash code for PICKLES: the database of pooled in-vitro CRISPR knockout library essentiality screens

  Python

  •0•1•2•0•Updated Dec 31, 2023Dec 31, 2023

• Optimal-Construction-of-Functional-Interaction-Network

  Public
  Data and Code used in "Optimal construction of a functional interaction network from pooled library CRISPR fitness screens"

  Jupyter Notebook

  •0•1•0•0•Updated Oct 21, 2022Oct 21, 2022

• dynamic_coessentiality_rewiring

  Public
  Jupyter Notebook

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  MIT License

  •0•1•0•0•Updated Jun 16, 2022Jun 16, 2022

• hartware

  Public
  A Python library of functions useful in our analysis pipelines

  Python

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  MIT License

  •0•0•0•0•Updated May 24, 2022May 24, 2022

• drugz

  Public
  DRUGZ software

  HTML

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  MIT License

  •17•25•1•2•Updated Aug 9, 2021Aug 9, 2021

• Proliferation-suppressor-genes-from-CRISPR-screens

  Public
  The following is code used in the analysis and figure generation of our project titled "Discovery of putative tumor suppressors from CRISPR screens reveals lipid hypersensitivity in AML cells"

  HTML

  •1•2•0•0•Updated Oct 7, 2020Oct 7, 2020

• druggs

  Public
  Gibbs sampling approach for detecting drug-gene interactions with CRISPR screens

  Python

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  MIT License

  •0•3•0•0•Updated Jun 15, 2018Jun 15, 2018