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    11 repositories

    • tdp43-binding-stability

      Public
      Analysis of RNA BNS and SLAM-seq
      0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • OINC-seq

      Public
      oxidation induced nucleotide conversions
      Python
      •
      MIT License
      •3•3•0•0•Updated May 21, 2025May 21, 2025

    • LABRAT

      Public
      Lightweight Alignment Based Resolution of Alternative Three Prime Ends
      Python
      •
      MIT License
      •4•10•2•0•Updated Jan 26, 2024Jan 26, 2024

    • OligoPools

      Public
      Scripts to make oligonucleotide pools and analyze data from them
      HTML
      •0•0•0•0•Updated May 10, 2023May 10, 2023

    • AnalysisScripts

      Public
      A motley collection of scripts used for analysis of high-throughput sequencing data
      Python
      •
      MIT License
      •2•3•0•0•Updated Mar 10, 2023Mar 10, 2023

    • FoldTDP43Oligos

      Public
      high throughput folding of oligonucleotides containing TDP43 motif from MPRA
      Python
      •0•0•0•0•Updated Jan 11, 2023Jan 11, 2023

    • FeatureReachR

      Public
      R
      •3•3•2•0•Updated Aug 12, 2021Aug 12, 2021

    • teaching

      Public
      teaching material
      HTML
      •2•7•1•0•Updated Sep 18, 2020Sep 18, 2020

    • LS2

      Public
      Code for the analysis of the splicing activity of LS2 and its mutants
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 3, 2020Sep 3, 2020

    • SubcellularRNAseqExample

      Public
      Example code for the analysis of neuronal subcellular RNAseq data
      HTML
      •1•0•0•0•Updated Sep 3, 2020Sep 3, 2020

    • UniqueUTRseqs

      Public
      Identify transcript sequences that are unique to one polyadenylation isoform
      Python
      •0•0•0•0•Updated Feb 7, 2018Feb 7, 2018
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