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Use s prefix for multiscale example #311

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Use s prefix for multiscale example #311

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1a7c38a
Use s prefix for multiscale example
mkitti Apr 30, 2025
e7fff75
Adapt index.bs and multiscales_transformations.json to use s prefix
mkitti Sep 24, 2025
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6 changes: 3 additions & 3 deletions examples/multiscales_strict/multiscales_example.json
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
],
"datasets": [
{
"path": "0",
"path": "s0",
"coordinateTransformations": [
{
// the voxel size for the first scale level (0.5 micrometer)
Expand All @@ -26,7 +26,7 @@
]
},
{
"path": "1",
"path": "s1",
"coordinateTransformations": [
{
// the voxel size for the second scale level (downscaled by a factor of 2 -> 1 micrometer)
Expand All @@ -36,7 +36,7 @@
]
},
{
"path": "2",
"path": "s2",
"coordinateTransformations": [
{
// the voxel size for the third scale level (downscaled by a factor of 4 -> 2 micrometer)
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2 changes: 1 addition & 1 deletion examples/multiscales_strict/multiscales_transformations.json
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Expand Up @@ -20,7 +20,7 @@
],
"datasets": [
{
"path": "0",
"path": "s0",
"coordinateTransformations": [
{
"scale": [1, 1],
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10 changes: 5 additions & 5 deletions index.bs
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Expand Up @@ -79,10 +79,10 @@ Note that the number of dimensions is variable between 2 and 5 and that axis nam
│ # Group level attributes are stored in the `zarr.json` file and include
│ # "multiscales" and "omero" (see below).
│
├── 0 # Each multiscale level is stored as a separate Zarr array,
├── s0 # Each multiscale level is stored as a separate Zarr array,
│ ... # which is a folder containing chunk files which compose the array.
├── n # The name of the array is arbitrary with the ordering defined by
│ │ # by the "multiscales" metadata, but is often a sequence starting at 0.
├── sn # The name of the array is arbitrary with the ordering defined by
│ │ # by the "multiscales" metadata, but is often a sequence starting at s0.
│ │
│ ├── zarr.json # All image arrays must be up to 5-dimensional
│ │ # with the axis of type time before type channel, before spatial axes.
Expand All @@ -104,7 +104,7 @@ Note that the number of dimensions is variable between 2 and 5 and that axis nam
├── zarr.json # Zarr Group which is both a multiscaled image as well as a labeled image.
│ # Metadata of the related image and as well as display information under the "image-label" key.
│
├── 0 # Each multiscale level is stored as a separate Zarr array, as above, but only integer values
├── s0 # Each multiscale level is stored as a separate Zarr array, as above, but only integer values
└── ... # are supported.

</pre>
Expand Down Expand Up @@ -143,7 +143,7 @@ A well group SHOULD NOT be present if there are no images in the well.
│ │ ├── 0 # First field of view of well A1
│ │ │ │
│ │ │ ├── zarr.json # Implements "multiscales", "omero"
│ │ │ ├── 0 # Resolution levels
│ │ │ ├── s0 # Resolution levels
│ │ │ ├── ...
│ │ │ └── labels # Labels (optional)
│ │ └── ... # Other fields of view
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