This repository contains the data and code used in the paper "Descent from a common ancestor restricts exploration of protein sequence space".
Repository structure:
- README.md
- LICENSE
- environment.yml
- data/ - summary tables, small example data
- figures/ - final versions of all figures and images used in the paper
- notebooks/ - Jupyter notebooks to reproduce all figures from summary tables
- params/ - run parameters for simulations
- src/ - all source code
- workflows/ - workflows the way they were run
Raw data can be found at Figshare DOI:10.6084/m9.figshare.31132711 (https://doi.org/10.6084/m9.figshare.31132711). (description of the included files is in data/README.md)