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Remove checkIfExists from interop file resolution #10942

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Merged
delfiterradas merged 5 commits into from
Mar 19, 2026
Merged

Remove checkIfExists from interop file resolution #10942

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b741476
Remove checkIfExists from interop file resolution
delfiterradas Mar 17, 2026
4045dfe
Fix interop file resolution for multiqcsav module
delfiterradas Mar 18, 2026
2c09d03
Merge branch 'master' into bcl_demux
delfiterradas Mar 18, 2026
2038087
Fix interopDir existence check in main.nf
delfiterradas Mar 18, 2026
e68bbf0
Merge branch 'master' into bcl_demux
delfiterradas Mar 18, 2026
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3 changes: 2 additions & 1 deletion subworkflows/nf-core/bcl_demultiplex/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,8 @@ workflow BCL_DEMULTIPLEX {
// MODULE: multiqcsav
ch_mqcsav_input = ch_flowcell
.map { meta, _samplesheet, flowcell ->
def interop = files(file(flowcell).resolve("InterOp/*.bin"), checkIfExists: true)
def interopDir = file(flowcell).resolve("InterOp")
def interop = file(interopDir).exists() ? files("${interopDir}/*.bin") : []
def xml = files(file(flowcell).resolve("*.xml"), checkIfExists: true)
return [meta, xml, interop]
}
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