Issues · mkiyer/chimerascan · GitHub

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Assert in sam_to_bam_pers.py

#27

· avkitex opened

on Jan 17, 2016

File "/usr/bin/chimerascan_run.py", line 24, in <module>

Priority-Medium

#26

· GoogleCodeExporter opened

on Nov 20, 2015

easy to fix linker error on some systems including macosx

Priority-Medium

#23

· GoogleCodeExporter opened

on Nov 20, 2015

Different length reads for R1 and R2

Priority-Medium

#24

· GoogleCodeExporter opened

on Nov 20, 2015

bowtie-build failed to create alignment index

Priority-Medium

#25

· GoogleCodeExporter opened

on Nov 20, 2015

Detail about output file

Priority-Medium

#20

· GoogleCodeExporter opened

on Nov 20, 2015

IOError: [Errno 24] Too many open files:

Priority-Medium

#21

· GoogleCodeExporter opened

on Nov 20, 2015

Crashed with error "'bowtie-build' failed to create breakpoint index"

Priority-Medium

#22

· GoogleCodeExporter opened

on Nov 20, 2015

CHIMERASCAN 0.4.5 runs for hours then gets killed by my system

Priority-Medium

#19

· GoogleCodeExporter opened

on Nov 20, 2015

Detailed explanation of chimerascan output

Priority-Medium

#16

· GoogleCodeExporter opened

on Nov 20, 2015

crash after "Extracting single-mapped reads that may span breakpoints"

Priority-Medium

#17

· GoogleCodeExporter opened

on Nov 20, 2015

Sudden crash during runtime

Priority-Medium

#18

· GoogleCodeExporter opened

on Nov 20, 2015