Dear mkiyer,
I'm trying to run chimerascan-0.5.0 on bowtie2
I've succesfully created index (I've made a program for creating annotaion for chimerascan new format). But chimerascan doesn't pass assert statement in chimerascan/pipeline/sam_to_bam_pesr.py
34 assert r.qname == fqrec.qname
Could you give me a piece of advice, how could i fix it? Or maby chimerascan-0.5.0 is not finished at all and it's mach easie to use chimerascan-0.4.5 on bowtie 0.12?
Ubuntu 14.04, BT-474 cell line rna-seq (Edgren follicular lymphoma dataset) phred-33.
Dear mkiyer,
I'm trying to run chimerascan-0.5.0 on bowtie2
I've succesfully created index (I've made a program for creating annotaion for chimerascan new format). But chimerascan doesn't pass assert statement in chimerascan/pipeline/sam_to_bam_pesr.py
34 assert r.qname == fqrec.qnameCould you give me a piece of advice, how could i fix it? Or maby chimerascan-0.5.0 is not finished at all and it's mach easie to use chimerascan-0.4.5 on bowtie 0.12?
Ubuntu 14.04, BT-474 cell line rna-seq (Edgren follicular lymphoma dataset) phred-33.