Bioc parallel #120
Draft
Bioc parallel #120
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
to consolidate parallelizations args before using biocParallel
done by get_nested_params
reduce verbosity but configurable
pollutes progress info with too many bars
Its only slower than parallel when group = TRUE
jamespeapen
force-pushed
the
biocParallel
branch
from
717164e to
2feb10b
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Use BiocParallel for parallel operations.
Add some functions to correctly handle thread requests considering nested parallelism.
Fixes #105.