Contribution

.gitignore

@@ -1,3 +1,16 @@
+
+# RStudio internals
+.Rproj.user
+*.RData
+*.Rhistory
+.Rhistory
+
+# MS Word files
+test*.docx
+~*.docx
+
+
+
 # Windows image file caches
 Thumbs.db
 ehthumbs.db
@@ -21,21 +34,18 @@ $RECYCLE.BIN/
 # OSX
 # =========================
 
-.DS_Store
-.AppleDouble
-.LSOverride
-
-# Icon must ends with two \r.
-Icon
-
-# Thumbnails
-._*
-
-# Files that might appear on external disk
-.Spotlight-V100
-.Trashes
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must ends with two \r.
+Icon
+
+
+# Thumbnails
+._*
+
+# Files that might appear on external disk
+.Spotlight-V100
+.Trashes
 *~
-*.Rhistory
-*.Rhistory
-*.Rhistory
-.Rproj.user

DESCRIPTION

@@ -1,19 +1,33 @@
 Package: biostat2
 Title: biostat, mais 2
-Version: 0.9.0
-Authors@R: person("David", "Hajage", email = "david.hajage@lmr.aphp.fr", role =
-    c("aut", "cre"))
-Description: Fonctions facilitant la description et l'analyse
+Encoding: UTF-8
+Version: 0.13.0
+Authors@R: c(
+    person("David", "Hajage", email = "david.hajage@lmr.aphp.fr", role = c("aut", "cre")),
+    person("Dan", "Chaltiel", email = "dan.chaltiel@gmail.com", role = c("ctb")))
+Description: Fonctions facilitant la description et l'analyse.
 Depends:
     R (>= 3.1.0)
 Imports:
     stats,
     plyr,
+    dplyr,
+    purrr,
+    checkmate,
     reshape2,
     Hmisc,
     survival,
-    ReporteRs,
+    methods,
+    gmodels,
+    DescTools,
+    officer,
+    flextable,
+    lifecycle,
     nortest
 License: GPL (>= 2)
 LazyData: true
-RoxygenNote: 6.0.1
+RoxygenNote: 7.1.0
+Suggests: 
+    testthat,
+    ReporteRs
+RdMacros: lifecycle

NAMESPACE

@@ -1,8 +1,10 @@
 # Generated by roxygen2: do not edit by hand
 
+S3method(diff,mean.auto)
+S3method(diff,mean.boot)
+S3method(diff,mean.student)
+S3method(diff,median)
 export(FlexCrossTable)
-export(Max)
-export(Min)
 export(addAlert)
 export(addCode)
 export(addComment)
@@ -13,28 +15,61 @@ export(addNormal)
 export(addPlotlegend)
 export(addTablegend)
 export(addVerbatim)
+export(as.crosstable)
+export(body_add_crosstable)
+export(body_add_crosstable_bak)
+export(body_add_glued)
+export(body_add_normal)
+export(body_add_table_legend)
+export(body_add_title)
+export(compact)
 export(create.report)
 export(cross)
+export(cross_to_flextable)
 export(display.effect)
 export(display.test)
+export(effect.survival.coxph)
 export(expand)
+export(format_fixed)
+export(mediqr)
+export(minmax)
+export(moystd)
 export(n)
 export(na)
+export(nna)
+export(or.col.by.row)
+export(or.row.by.col)
 export(paste.matrix)
 export(plim)
 export(rbind_crosstable)
+export(rd.col.by.row)
+export(rd.row.by.col)
+export(rr.col.by.row)
+export(rr.row.by.col)
 export(simple.table)
 export(test.summarize.auto)
 export(test.summarize.auto.old)
+export(test.summarize.contrasts.lin)
 export(test.summarize.kruskal)
 export(test.summarize.oneway.equalvar)
 export(test.summarize.oneway.unequalvar)
 export(test.survival.logrank)
 export(test.tabular.auto)
 export(test.tabular.fisher)
-import(ReporteRs)
+import(checkmate)
+import(flextable)
+import(gmodels)
+import(officer)
+import(stats)
 import(survival)
+importFrom(DescTools,CochranArmitageTest)
 importFrom(Hmisc,label)
+importFrom(dplyr,"%>%")
+importFrom(dplyr,lead)
+importFrom(dplyr,select)
+importFrom(dplyr,sym)
+importFrom(lifecycle,deprecate_warn)
+importFrom(methods,is)
 importFrom(nortest,ad.test)
 importFrom(plyr,.)
 importFrom(plyr,alply)