Search results

readCosmx functions would profit a loadPolygons argument

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In drighelli/SpaceTrooper;

· drighelli opened on Nov 28, 2025

CosMx protein data: "Error in checkOutliers(spe1, verbose) : Not enough outlier cells for log2CountArea. QC score computation cannot be performed"

Status: Open.

#50 In drighelli/SpaceTrooper;

· joaolsf opened on Nov 26, 2025

subsetting by fov doesn't affect fov_positions

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In drighelli/SpaceTrooper;

· drighelli opened on Nov 14, 2025

fov position file unaligned with centroids coordinates

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#47 In drighelli/SpaceTrooper;

· drighelli opened on Nov 14, 2025

CosMx isn't Nanostring anymore

enhancementNew feature or requestNew feature or request

Status: Open.

#44 In drighelli/SpaceTrooper;

· drighelli opened on Oct 19, 2025

omit realizing transcripts

Status: Open.

#43 In drighelli/SpaceTrooper;

· HelenaLC opened on Oct 7, 2025

computeSpatialOutlier needs to check existence of outlier colnames

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In drighelli/SpaceTrooper;

· drighelli opened on May 14, 2025

readPolygons does not support h5

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In drighelli/SpaceTrooper;

· drighelli opened on Apr 24, 2025

plotCentroids could benefit of a order_by argument

enhancementNew feature or requestNew feature or request

Status: Open.

#23 In drighelli/SpaceTrooper;

· drighelli opened on Feb 7, 2025

polygons geometry provide errors when not loaded with SpaceTrooper

Status: Open.

#22 In drighelli/SpaceTrooper;

· drighelli opened on Jan 29, 2025

store polygons as parquet

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In drighelli/SpaceTrooper;

· drighelli opened on Jan 29, 2025

plotCentroids and plotPolygons should allow user to plot subset of image

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In drighelli/SpaceTrooper;

· drisso opened on Jan 16, 2025