SpaceTrooper is a R/Bioconductor package for the preprocessing and quality control of imaging-based spatial transcriptomics and proteomics data.
The package is in Bioconductor since version 3.22, and it can be installed by
aid of the BiocManager package, if you are using the proper Bioconductor
version (3.22).
Please install the latest stable version of the package package with
BiocManager::install("SpaceTrooper)
On the other hand, if you want to install the package from Github, it could be unstable and R version must be at least 4.4.0.
We always suggest to use the latest version of the package present on the official Release of Bioconductor.
BiocManager::install("drighelli/SpaceTrooper", ref="devel")
If you were able to install the package correctly, CONGRATULATIONS!!! 🎉🎉🎉
We provide three additional vignettes for the package usage, first one is focused on imaging-based Spatial Transcriptomics technologies.
The second one is focused on CosMx protein technologies.
The third one is to describe how to switch from an already-loaded dataset with SpatialExperimentIO package and then upload the object to work with SpaceTrooper.
See the compiled version of the vignettes in the official Bioconductor landing page or visit the Vignette folder.
Please report any issue on GH here!
Thanks for checking out!🌸