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bedToBigBed version for FitHiChIP

Status: Open.

#111 In ay-lab/FitHiChIP;

· xiasijian opened on Jun 5, 2025

Can exactTest be safely replaced with glmQLFit to add batch effect correction?

Status: Open.

#110 In ay-lab/FitHiChIP;

· EASS132 opened on Apr 20, 2025

I met an error when computing ICE based bias vector from the HiC-pro contact matrix

Status: Open.

#109 In ay-lab/FitHiChIP;

· wingeredge opened on Apr 12, 2025

Could FitHiChIP merge loops between different biological replicates?

Status: Open.

#108 In ay-lab/FitHiChIP;

· ZhangZhaoheng24 opened on Mar 18, 2025

cat: /volumes/easystore/HiChIP_CTCF/Matrix_BinSize5000/sample.interactions.initial.bed: No such file or directory - FitHiChIP is quiting

Status: Open.

#107 In ay-lab/FitHiChIP;

· hd931 opened on Jul 23, 2024

FitHiChIP_Singularity.sh ERROR

Status: Open.

#106 In ay-lab/FitHiChIP;

· yxralba088 opened on Jun 12, 2024

Differential loop analysis

Status: Open.

#105 In ay-lab/FitHiChIP;

· helenhuangmath opened on Feb 29, 2024

FitHiChIP requests different input than specified in documentation

Status: Open.

#104 In ay-lab/FitHiChIP;

· roniweiss12 opened on Feb 4, 2024

An easy way to get the whole genome expected interaction matrix

Status: Open.

#103 In ay-lab/FitHiChIP;

· zhangylab opened on Dec 18, 2023

Error in .compressOffsets(y, offset = offset) : offsets must be finite values Calls: ApplyEdgeR -> exactTest -> mglmOneGroup -> .compressOffsets

Status: Open.

#102 In ay-lab/FitHiChIP;

· Gemma-Zhang-326 opened on Nov 17, 2023

How to get common loops between two samples

Status: Open.

#101 In ay-lab/FitHiChIP;

· remeseirogrp opened on Nov 8, 2023

option to fragment interactions?

Status: Open.

#100 In ay-lab/FitHiChIP;

· hugch2020 opened on Nov 1, 2023