Metasheller

Metasheller is a pip installable package to create metacells using SEACells quickly (and in parallel).

I've applied it to noisy scRNA data from many samples prior to running SLIDE, and to reduce the number of representative cells of a certain clonotype.

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🚀 Installation

It's recommended to use a dedicated Python environment for Metasheller. Here’s a quick guide:

1. Create a new environment

conda create -n metasheller-env python=3.8
conda activate metasheller-env

2. Install Metasheller via pip

pip install metasheller

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📚 Tutorial

To get started quickly, follow the example in tutorial.ipynb

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