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<code>pyscenic grn</code> OSError: [Errno 92] Protocol not available

Status: Open.

#89 In aertslab/SCENICprotocol;

· danli349 opened on Dec 31, 2025

pyscenic command execution issue in Singularity container

Status: Open.

#88 In aertslab/SCENICprotocol;

· williambi1 opened on Nov 18, 2025

Suitability of 'expected counts' from Smart-seq2 RSEM analysis as input for SCENIC

Status: Open.

#87 In aertslab/SCENICprotocol;

· jjacob12 opened on Feb 9, 2025

"Clustering of cells based on regulon activity"

Status: Open.

#86 In aertslab/SCENICprotocol;

· salihaey opened on Nov 18, 2024

How should one interpret or do with those cells assigned to a different cluster by SCENIC?

Status: Open.

#85 In aertslab/SCENICprotocol;

· robertzeibich opened on Oct 20, 2024

Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.

Status: Open.

#83 In aertslab/SCENICprotocol;

· chenfengQAQ opened on Jun 22, 2024

nextflow Segmentation fault preprocess_visualize_project_scanpy.py cluster

Status: Open.

#82 In aertslab/SCENICprotocol;

· vagabond12 opened on Apr 7, 2024

Will regulon outputs be biased by a large proportion of homogeneous cells in my dataset?

Status: Open.

#81 In aertslab/SCENICprotocol;

· katsturgess opened on Dec 19, 2023

Kernal dead

Status: Open.

#80 In aertslab/SCENICprotocol;

· Chrisdoan9 opened on Nov 15, 2023

TypeError: void() takes exactly 1 positional argument (0 given)

Status: Open.

#79 In aertslab/SCENICprotocol;

· clg12 opened on Aug 27, 2023

Cannot load pbmc10k_scenic_integrated-output.loom following the Jupyter notebook tutorial

Status: Open.

#78 In aertslab/SCENICprotocol;

· kangjiajinlong opened on Aug 25, 2023

KeyError: 'RegulonsAUC' when running PBMC10k_SCENIC-protocol-CLI

Status: Open.

#77 In aertslab/SCENICprotocol;

· geenaildefonso opened on Aug 11, 2023