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Image_qc.py Warning - QC failed

Status: Open.

#269 In STOmics/SAW;

· parkjooyoung99 opened on Feb 17, 2026

Download chip mask using download_mask add-on

Status: Open.

#268 In STOmics/SAW;

· Nakyung210 opened on Feb 16, 2026

Cell segmentation mask doesn't fit image

Status: Open.

#267 In STOmics/SAW;

· pikapika505 opened on Feb 13, 2026

lasso tool

Status: Open.

#266 In STOmics/SAW;

· adilysyn opened on Feb 11, 2026

Question about accessing raw test data via Raysync

Status: Open.

#265 In STOmics/SAW;

· bcctpn opened on Feb 10, 2026

Compare gene expression across two experiments

Status: Open.

#264 In STOmics/SAW;

· adilysyn opened on Jan 28, 2026

Integration + alignment of third-party cell segmentation masks

Status: Open.

#261 In STOmics/SAW;

· pool-es opened on Dec 17, 2025

Low MID counts

Status: Open.

#258 In STOmics/SAW;

· pikapika505 opened on Nov 25, 2025

UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa6 in position 4: invalid start byte

Status: Open.

#257 In STOmics/SAW;

· Cathaya-sasa opened on Nov 11, 2025

How does SAW decide to flip the image?

Status: Open.

#255 In STOmics/SAW;

· roanvanscheppingen opened on Oct 24, 2025

Aligning DAPI/mask images to regist.tif

Status: Open.

#254 In STOmics/SAW;

· pool-es opened on Oct 20, 2025

Missing file after bam sort (SAW 8.2)

Status: Open.

#252 In STOmics/SAW;

· roanvanscheppingen opened on Oct 18, 2025