Cleanup mesh intersection#281

Merged

jacobmerson merged 90 commits intoSCOREC:developfrom

jacobmerson:cleanup-mesh-intersection

Mar 15, 2026

Commits on Mar 14, 2026

add new rbf functions

abhiyan123
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minor changes

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add doxygen comment

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add mesh intersection files

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add doxygen comments

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add doxygen comments

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add doxygen comments

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add doxygen comments

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minor fixes

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update doxygen comments

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update comments

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update CMakeLists

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update CMakeLists
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update topmost CMakeLists
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update CMakeLists

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add pcms namespace

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add load vector test

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add namespace

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remove main

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correct the name of petsc variables

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correct the petsc variables name

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add PCMS_ENABLE_PETSC and PCMS_ENABLE_MESHFIELDS macros

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fix memory space issue

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fix petsc variable name

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fix header name

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fix header name

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add more rbfs and their use cases

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fix constructor

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remove semicolon

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resolve copilot suggestions
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create a localization target
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add pcms namespace to all interpolator files
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fix missing dimension in MLS construction
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factor our centroid computations
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extract distance squared helper function
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factor out helper function for loading Vector<3> from points array
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remove duplicated helper functions for computing centroids
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raname interpolator -> transfer
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Omega_h R3D no longer support R3D_USE_CUDA option
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ensure transfer functions are in pcms namespace
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use memory/execution spaces from utility headers
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Add FindPETSc.cmake for static+shared builds
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move non-templated code to .cpp files
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add basic test for mesh intersection based field transfer
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remove duplicate centroid computation
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factor out helper function to convert petsc vector to Omega_h array
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factor out for_each_intersection_subtriangle that constructs subtriangles of polytopes for the user to perform operations
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factor out support building code
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factor out function for adding support points to search queue
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mark debug helpers as [[maybe_unused]] to silence compiler warnings
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extract helpers for copying view data to 1D arrays
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use Omega_h::get_max for computing array max
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update header guards for consistency with rest of project
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remove unused support struct creation
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update include guards to match project template with PCMS_ prefix and matching file names
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factor out matrix /vector construction
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cleanup unused headers
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disable perfstubs timers
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update CI debugging to dump the pcms_interpolator-targets.cmake
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update config file file with petsc dependency
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update petsc in external build example
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fix external build
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change to git PETSC_COMM_WORLD from PETSC_COMM_SELF

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add full conservative transfer test

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add intersection search test

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add function that remove duplicates nodes and fix links

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change PETSC_COMM_SELF to PETSC_COMM_WORLD

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delete test_conservative_field_transfer.cpp

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add R3D_USE_KOKKOS

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remove order

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remove source_coordinates initialization

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take mesh.coords() out of kernel

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change the mesh

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remove second r3d test

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add petsc default arguments

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add petsc default file

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add petsc arguments

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change from .h to .hpp

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remove petsc options file

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add vec type kokkos

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add mat type aijkokkos

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delete petsc options

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update test

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remove petsc options header

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fix rbf_interpolation compilation
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resolve clang-tidy errors
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resolve clang-format formatting issues
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resolve localization library path for mesh_fields adapter
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Commits on Mar 15, 2026