Installation

Install & run test

Create your Tiresias directory:
mkdir Tiresias

Clone the git repository:
git clone https://github.com/RausellLab/tiresias
or
git clone git@github.com:RausellLab/Tiresias.git

Enter the git directory:
cd Tiresias/

Setup your conda environment:
conda env create -f environment.yml

Activate your conda environment:
conda activate tiresias

Pull node2vec docker image:
make node2vec-image

If docker is not found, try first to run:
python3 -m pip install --user docker

Run test with the dummy data provided to make sure Tiresias is ready to use:
make pipeline

See the results (with MLFlow: https://mlflow.org/):
mlflow ui
Go to http://localhost:5000/ in your web browser.

After having installed the conda and docker dependencies and cloned the Tiresias git package as presented in the README file, and before running it for your disease gene list of interest, check the Guidelines below.