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To download the binary java package directly, you can click PhyloNet.jar.
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To download the source code and build by yourself, you can clone the repo and use command "ant".
The basic usage is java -jar PhyloNet.jar name.nex.
- PhyloNet homepage.
- General overview for installation, basic usage, input and output examples.
- List of PhyloNet commands for preparing nexus files for command.
- PhyloNet tutorial for input nexus file examples of phylogenetic network inference.