Update hipo deps

.github/workflows/build-and-publish-wheels.yml

@@ -0,0 +1,131 @@
+name: Build and Publish Wheels
+
+on:
+  push:
+    branches: ['main']
+    tags:
+      - "v*"  # Build & publish on version tags (e.g. v1.2.3)
+  workflow_dispatch:  # Allow manual trigger
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+
+      - name: Install Poetry
+        run: |
+          python -m pip install --upgrade pip
+          pip install poetry
+
+      - name: Configure Poetry
+        run: poetry config virtualenvs.create true && poetry lock
+
+      - name: Install dependencies
+        run: poetry install --no-interaction --no-root
+
+      - name: Check C++ formatting
+        run: |
+          echo "Checking C++ code formatting..."
+          poetry run clang-format --dry-run --Werror $(find src/ -name '*.cpp' -o -name '*.hpp')
+
+      - name: Build package wheel
+        run: |
+          pip install cibuildwheel
+          if [[ "$RUNNER_OS" == "Linux" ]]; then
+            cibuildwheel --output-dir dist --platform linux
+          elif [[ "$RUNNER_OS" == "macOS" ]]; then
+            CIBW_CONFIG_SETTINGS="setup-args=-Dmacos_arch=x86_64" cibuildwheel --output-dir dist --platform macos --archs x86_64
+            CIBW_CONFIG_SETTINGS="setup-args=-Dmacos_arch=arm64" cibuildwheel --output-dir dist --platform macos --archs arm64
+          fi
+        env:
+          MACOSX_DEPLOYMENT_TARGET: '15.0'
+          CIBW_SKIP: "pp* *-musllinux* cp36-* cp37-* cp38-*"
+          HOMEBREW_PREFIX: ""
+          HOMEBREW_CELLAR: ""
+          HOMEBREW_REPOSITORY: ""
+          PKG_CONFIG_PATH: ""
+          CIBW_ENVIRONMENT: "HOMEBREW_PREFIX='' HOMEBREW_CELLAR='' HOMEBREW_REPOSITORY='' PKG_CONFIG_PATH=''"
+
+      - name: Upload built wheels
+        uses: actions/upload-artifact@v4
+        with:
+          name: wheels-${{ matrix.os }}
+          path: dist/*.whl
+
+  publish_testpypi:
+    name: Publish to TestPyPI
+    needs: build_wheels
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+
+      - uses: actions/download-artifact@v4
+        with:
+          path: dist
+      - name: Upload to TestPyPI
+        run: |
+          pip install --upgrade pip poetry
+          ls -lrth dist
+          mkdir -p dist_flat
+          cp dist/**/*.whl dist_flat/
+          rm -rf dist
+          mv dist_flat dist
+          ls -lrth dist
+          poetry config repositories.testpypi https://test.pypi.org/legacy/
+          poetry publish -r testpypi -u __token__ -p ${{ secrets.TESTPYPI_API_TOKEN }}
+
+  publish:
+    name: Publish to PyPI
+    needs: publish_testpypi
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+
+      - name: Download distributions
+        uses: actions/download-artifact@v4
+        with:
+          path: dist
+
+      - uses: actions/download-artifact@v4
+        with:
+          path: dist
+      - name: Upload to PyPI
+        run: |
+          pip install --upgrade pip poetry
+          mkdir -p dist_flat
+          cp dist/**/*.whl dist_flat/
+          rm -rf dist
+          mv dist_flat dist
+          ls -lrth dist
+          poetry publish -u __token__ -p ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/python.yml

@@ -0,0 +1,68 @@
+name: Build and Install (Python Matrix)
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+
+jobs:
+  test:
+    name: python-${{ matrix.python }}-${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python: ["3.9","3.10","3.11","3.12","3.13","3.14"]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python }}
+
+      - name: Install Poetry
+        run: |
+          python -m pip install --upgrade pip
+          pip install poetry
+
+      - name: Configure Poetry
+        run: poetry config virtualenvs.create true && poetry lock
+
+      - name: Install dependencies
+        run: poetry install --no-interaction --no-root
+
+      - name: Check C++ formatting
+        run: |
+          echo "Checking C++ code formatting..."
+          poetry run clang-format --dry-run --Werror $(find src/ -name '*.cpp' -o -name '*.hpp')
+
+      - name: Build package wheel
+        run: |
+          poetry build
+
+      - name: Patch RPATHs in wheel
+        run: |
+          if [[ "$RUNNER_OS" == "Linux" ]]; then
+            pip install auditwheel patchelf
+            auditwheel repair -w repaired_dist/ dist/*.whl
+          elif [[ "$RUNNER_OS" == "macOS" ]]; then
+            pip install delocate
+            delocate-listdeps dist/*.whl
+            delocate-wheel -w repaired_dist/ dist/*.whl
+          fi
+
+      - name: Install package wheel
+        run: |
+          ls -lrth repaired_dist
+          poetry run pip install repaired_dist/*.whl
+
+      - name: Run tests
+        run: |
+          poetry run pytest --maxfail=1 --disable-warnings -q

.gitignore

@@ -3,7 +3,7 @@
 *CMakeFiles
 *cmake_install.cmake
 *Makefile
-*build
+build
 
 # Pip files
 *.egg-info/

.gitmodules

@@ -1,6 +1,3 @@
-[submodule "pybind11"]
-	path = pybind11
-	url = https://github.com/pybind/pybind11.git
 [submodule "hipo"]
 	path = hipo
 	url = https://github.com/gavalian/hipo.git

README.md

@@ -1,42 +1,62 @@
 #  HipopyBind : HIPO PyBind11 Library
+[![PyPI](https://img.shields.io/pypi/v/hipopybind.svg)](https://pypi.org/project/hipopybind/)
+[![Python](https://github.com/mfmceneaney/hipopybind/actions/workflows/python.yml/badge.svg)](https://github.com/mfmceneaney/hipopybind/actions/workflows/python.yml)
+
+This project exposes in python the [hipo](https://github.com/gavalian/hipo) classes and a few
+custom classes and functions from C++ via [pybind11](https://github.com/pybind/pybind11).
 
 ## Prerequisites
 
-* Python >=3.7.3
-* A compiler with C++11 support
-* Pip 10+ or CMake >= 3.15 (or 3.14+ on Windows, which was the first version to support VS 2019)
+* macos or linux, windows is **not** supported
+* Python >=3.9
+* A compiler with C++17 support
 * Ninja or Pip 10+
+* meson
 
-## Installation
+## :green_circle: Installation
 
 To install from PyPi run:
 
 ```bash
 pip install hipopybind
 ```
 
-To compile the library from source run the following:
+Compiling the library from source is **platform dependent**.
 
+On macos run:
 ```bash
 git clone --recurse-submodules https://github.com/mfmceneaney/hipopybind.git
 cd hipopybind
-cmake .
-make
+pip install poetry delocate
+poetry build
+delocate-wheel -w repaired_dist/ dist/*.whl
+pip install repaired_dist/*.whl
 ```
 
-And add the following to your startup script:
+On linux run:
 
 ```bash
-export PYTHONPATH=$PYTHONPATH\:/path/to/hipopybind
+git clone --recurse-submodules https://github.com/mfmceneaney/hipopybind.git
+cd hipopybind
+pip install poetry auditwheel
+poetry build
+auditwheel repair -w repaired_dist/ dist/*.whl
+pip install repaired_dist/*.whl
 ```
 
-# Developer Note
-For updating submodules run the following:
+# :rocket: Getting Started
 
+Run the tutorials via:
 ```bash
-git submodule update --init --recursive
+python3 tutorials/write.py
+python3 tutorials/read.py
 ```
 
+# :red_circle: Troubleshooting
+If you run into import errors because of undefined symbols when using the project along
+with cppyy python libraries, try importing this library first since symbol visibility set to
+hidden during compilation.
+
 #
 
 Contact: matthew.mceneaney@duke.edu

cross_x86_64_macos.txt

@@ -0,0 +1,34 @@
+# cross_x86_64_macos.txt
+# Cross compilation configuration for building x86_64 binaries on an arm64 macOS host.
+
+[binaries]
+c = 'clang'
+cpp = 'clang++'
+ar = 'ar'
+strip = 'strip'
+pkgconfig = '/bin/true'  # disables pkg-config lookups
+
+[properties]
+# Tell Meson we’re cross-compiling for macOS x86_64
+needs_exe_wrapper = false
+has_function_printf = true
+skip_sanity_check = false
+sys_root = '/'
+
+[built-in options]
+c_args = ['-arch', 'x86_64']
+cpp_args = ['-arch', 'x86_64']
+c_link_args = ['-arch', 'x86_64']
+cpp_link_args = ['-arch', 'x86_64']
+
+[host_machine]
+system = 'darwin'
+cpu_family = 'x86_64'
+cpu = 'x86_64'
+endian = 'little'
+
+[build_machine]
+system = 'darwin'
+cpu_family = 'arm64'
+cpu = 'arm64'
+endian = 'little'