feat: updated shiver dockerfile with more libs and gatk4#361
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kelly-sovacool merged 2 commits intodevfrom Mar 19, 2026
Merged
feat: updated shiver dockerfile with more libs and gatk4#361kelly-sovacool merged 2 commits intodevfrom
kelly-sovacool merged 2 commits intodevfrom
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looks good and the build completed successfully
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Changes
Uses updated nciccbr base image (nciccbr/ccbr_ubuntu_22.04:v4)
Replaces reliance on pre-existing mamba/conda in the base image with an explicit Miniforge installation (/opt2/conda)
Uses mamba for deterministic and faster environment resolution
Fixes unsatisfiable dependencies by aligning versions required by gatk4 (Python 3.10, OpenJDK 17) and removing incompatible hard pins (e.g., numpy, pandas)
This comment contains a description of changes with justifications, with any relevant issues linked.
Write unit tests for any new features, bug fixes, or other code changes.
[ ] Update docs if there are any API changes.[ ] UpdateCHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/