Analysis and Data: "UV irradiation remodels the specificity landscape of transcription factors".

This is the GitHub repo for the paper: "UV irradiation remodels the specificity landscape of transcription factors" which is currently in review with a preprint available at bioRxiv (doi: 10.1101/2022.10.07.511343). The repository contains the data and code used to generate the figures in the paper.

Repository Organization

The repository has 3 top level directories: Analysis, Data, and Design.

1. Analysis: Contains folders representing the analysis output used to create each figure and table (ex/ Figure_1, Table_S2) and a Code folder containing the code for analysis.
2. Data: Contains the data used by the code in the Analysis directory.
3. Design: Contains array design information for UV-Bind sequences as well as the code and data used to design the UV-preferred k-mer arrays.