jemm = Joint Exon Measure Model

This package faciliates the downstream statistical analysis of junction-based alternative splicing, using read counts from Darts (Zhang et al., 2019, Nature Methods) and SUPPA (Trincado et al., 2018, Genome Biology).

You can install it from PyPI by

pip install jemm

The main functions include:

• read and harmonize the PSIs from different measurements
• construct python class for storing and accessing such information
• perform differential analysis: generalized linear model, mixed model, linear regression

FZZ

Initial: 2022.03.20

Update: 2022.11.30