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Can COMMOT scores be compared across samples? Differential testing of COMMOT scores?

Status: Open.

#42 In zcang/COMMOT;

· AmosFong1 opened on Jan 14, 2026

How to export COMMOT results to CellChat-style C–C–L–R–p.val–score table

Status: Open.

#41 In zcang/COMMOT;

· Zijiang8 opened on Jul 31, 2025

How can the method be used to compare CCIs between different ST slices from diseased and normal tissue?

Status: Open.

#40 In zcang/COMMOT;

· Mark-wt opened on Jun 20, 2025

group_communication_direction: Keys = None having an error

Status: Open.

#39 In zcang/COMMOT;

· parkjooyoung99 opened on Feb 2, 2025

the stream by grid is outside of grid and is there parameters to adjust for this?

Status: Open.

#38 In zcang/COMMOT;

· brainfo opened on Aug 29, 2024

How to input a customized distance matrix?

Status: Open.

#37 In zcang/COMMOT;

· duzc-Repos opened on Jul 11, 2024

visium hd support

Status: Open.

#36 In zcang/COMMOT;

· revolvefire opened on Jul 8, 2024

TypeError: _detect_vcs() missing 2 required positional arguments: 'expected_vcs' and 'path'

Status: Open.

#35 In zcang/COMMOT;

· uni987 opened on Jun 5, 2024

Updated the requirements.txt

Status: Open.

#33 In zcang/COMMOT;

· stear-alec opened on Apr 24, 2024

How does commot calculates the number of L-R

Status: Open.

#31 In zcang/COMMOT;

· caiquanyou opened on Mar 15, 2024

COMMOT in Seurat object

Status: Open.

#30 In zcang/COMMOT;

· nsdelablancac opened on Feb 5, 2024

error' single positional indexer is out-of-bounds' when using 'ct.tl.spatial_communication'

Status: Open.

#29 In zcang/COMMOT;

· yao50985098 opened on Jan 19, 2024