feat(vcf): add vcf_filter example for quality-based filtering#370
Open
VedantMadane wants to merge 1 commit intozaeleus:masterfrom
Open
feat(vcf): add vcf_filter example for quality-based filtering#370VedantMadane wants to merge 1 commit intozaeleus:masterfrom
VedantMadane wants to merge 1 commit intozaeleus:masterfrom
Conversation
Add a new example demonstrating how to filter VCF records by minimum quality score threshold. This common operation is useful for quality control in variant calling pipelines. Example usage: cargo run --release --example vcf_filter input.vcf 30.0
0c98991 to
eceab7d
Compare
Author
|
Hi @zaeleus, could you please trigger the CI checks for this PR? Thank you! |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adds a new vcf_filter example demonstrating how to filter VCF records based on quality score thresholds. This is a common operation in variant calling pipelines for quality control.
Usage: cargo run --release --example vcf_filter input.vcf 30.0 > filtered.vcf
Changes: