easyEWAS Materials

This repository contains materials related to the easyEWAS R package. Below is a description of each file included:

Files

1. easyEWAS-manual.pdf
   This document provides detailed explanations for every function and argument in the easyEWAS package.

2. benchmark_cores.R
   This script tests the optimal number of parallel computing cores for running the startEWAS() function.

3. simulation_CoxPH.R
   This script generates simulated data to test the performance of the Cox Proportional Hazards model (CoxPH).

4. simulation_GLM.R
   This script generates simulated data to test the performance of the General linear model (GLM).

5. simulation_LMM.R
   This script generates simulated data to test the performance of the Linear Mixed-Effects Model (LMM).

6. Install_easyEWAS.R
   This script will automatically check your R version, configure the appropriate Bioconductor version, and install all necessary packages (including those from CRAN and Bioconductor) required to use easyEWAS.