#Gephi-ForceLayout To run this jar file, Java 1.7 should be used.

##Usage: java -jar gephi-toolkit-demos2-1.0-SNAPSHOT-jar-with-dependencies.jar input_seq.fas input_vector.csv output1.txt output2.txt output3.txt output_graph.gml output_hcv.json output.pdf output_hcv.json file will be used in the d3-force layout visualization

##Usage example: java -jar gephi-toolkit-demos2-1.0-SNAPSHOT-jar-with-dependencies.jar AMC_P01_1b.fas AMC_P01_1b_vector.csv output_aligned1.txt trueSame1.txt falseSame1.txt /scicomp/home/yqb7/allData/hepatitis/kstep/test2/graph.gml hcv.json autolayout.pdf

References:

• See website
• See Toolkit Portal
• Source code