Sequence-graphClustering

To run this jar file, Java 1.7 should be used.

Usage:

java -jar sequenceGraph-projects-1.0-jar-with-dependencies.jar input_seq.fas input_vector.csv output1.txt output2.txt output3.txt output_graph.gml

Usage Example:

java -jar sequenceGraph-projects-1.0-jar-with-dependencies.jar AMC_P01_1b.fas AMC_P01_1b_vector.csv output_aligned1.txt trueSame1.txt falseSame1.txt graph.gml