Context modulates brain state dynamics and behavioral responses during narrative comprehension

This repository contains the code for

Chen, Y., Zada, Z., Nastase, S. A., Ashby, F. G., & Ghosh, S. S. (2025). Context modulates brain state dynamics and behavioral responses during narrative comprehension. bioRxiv, 2025-04.

.
├── README.md
├── TREE.md
├── environment.yml
├── generate_tree.sh
├── notebooks
│   ├── RR_figure5_supplement.ipynb
│   ├── behav.ipynb
│   ├── figure1.ipynb
│   ├── figure2.ipynb
│   ├── figure3.ipynb
│   ├── figure4.ipynb
│   ├── figure4_RR.ipynb
│   └── figure5.ipynb
├── results
│   ├── behavioral_content_analysis.md
│   ├── behavioral_content_analysis_supplement.md
│   ├── cluster1_combined_2states_deviation_th080.md
│   ├── cluster2_combined_7states_deviation_th080.md
│   ├── cluster3_combined_2states_deviation_th080.md
│   └── cluster4_combined_6states_deviation_th080.md
└── script
    ├── 01_postproc.py
    ├── 01_postproc.sh
    ├── 02_extract_parcels.py
    ├── 03_get_networks.py
    ├── 04_single_group_hmm_ntw.py
    ├── 04_single_group_hmm_ntw.sh
    ├── 05_model_comp.py
    ├── 06_state_pattern_cluster.py
    ├── 07_RR_cluster_stability.py
    ├── 07_RR_cluster_viz.py
    ├── 07_RR_correlation.py
    ├── 07_RR_individual_states.py
    ├── 07_extract_cluster_data.py
    ├── 07_map_cluster2stateseq.py
    ├── 08_behav_proc.py
    ├── 08_behav_proc_bin_1s.py
    ├── 08_stimuli_annot.py
    ├── 08_stimuli_annot_bin_1s.py
    ├── 09_behavior_content_glmm.py
    ├── 09_behavior_content_glmm_bin_1s.py
    ├── 09_brain_content_glmm.py
    ├── 09_brain_content_glmm.sh
    ├── 10_result2md.py
    ├── __init__.py
    └── utils
        ├── __init__.py
        ├── glmm.py
        ├── pattern_cluster.py
        └── result2md.py

5 directories, 46 files