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README: Update run dev command to use release mode Test CoverM with Pixi #266: Commit b75eb6c pushed by wwood
1m 46s main
main
1m 46s
pages build and deployment pages-build-deployment #78: by wwood
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main
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pixi: Make coverm a project so it can be a source package. Test CoverM with Pixi #265: Commit 55f5b15 pushed by wwood
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main
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pages build and deployment pages-build-deployment #77: by wwood
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main
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coverm: Add -p minimap2-lr-hq option. Test CoverM with Pixi #264: Commit 64a42cc pushed by wwood
2m 13s main
main
2m 13s
pages build and deployment pages-build-deployment #76: by wwood
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main
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coverm: Add -m minimap2-lr-hq option. Test CoverM with Pixi #263: Commit 2d90721 pushed by wwood
2m 47s main
main
2m 47s
pages build and deployment pages-build-deployment #75: by wwood
38s main
main
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Add minimap2-lr-hq mapper support; fix clippy warnings and remove flaky help test Test CoverM with Pixi #262: Pull request #284 synchronize by wwood
2m 14s codex/add-minimap2-lr-hq-mapping-strategy
codex/add-minimap2-lr-hq-mapping-strategy
2m 14s
Add minimap2 lr:hq contig coverage test Test CoverM with Pixi #261: Commit 298ff21 pushed by wwood
2m 7s codex/add-minimap2-lr-hq-mapping-strategy
codex/add-minimap2-lr-hq-mapping-strategy
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AGENTS.md: Initial effort. Test CoverM with Pixi #260: Commit f835439 pushed by wwood
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pages build and deployment pages-build-deployment #74: by wwood
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main
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Add minimap2-lr-hq mapper support; fix clippy warnings and remove flaky help test Test CoverM with Pixi #259: Pull request #284 opened by wwood
3m 31s codex/add-minimap2-lr-hq-mapping-strategy
codex/add-minimap2-lr-hq-mapping-strategy
3m 31s
Fix clippy warnings and remove help test Test CoverM with Pixi #258: Commit 71cda0c pushed by wwood
2m 6s codex/add-minimap2-lr-hq-mapping-strategy
codex/add-minimap2-lr-hq-mapping-strategy
2m 6s
Add option to name cached BAM outputs, rename --bam-file-cache-direct… Test CoverM with Pixi #257: Commit c91a9b9 pushed by wwood
2m 22s codex/add-minimap2-lr-hq-mapping-strategy
codex/add-minimap2-lr-hq-mapping-strategy
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Merge remote-tracking branch 'origin/codex/fix-bam-file-handling-for-… Test CoverM with Pixi #256: Commit 2b82bcd pushed by wwood
2m 1s xmapper
xmapper
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tests: Fix, I think. Test CoverM with Pixi #255: Commit 3c6eba3 pushed by wwood
1m 50s xmapper
xmapper
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Ensure concatenated reference FASTA temp file has .fasta suffix Test CoverM with Pixi #254: Pull request #281 synchronize by wwood
2m 21s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
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Add x-mapper genome CLI test using genome-fasta-files Test CoverM with Pixi #253: Commit d201538 pushed by wwood
2m 1s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
2m 1s
Ensure concatenated reference FASTA temp file has .fasta suffix Test CoverM with Pixi #252: Pull request #281 opened by wwood
3m 10s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
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Ensure concatenated reference FASTA has extension Test CoverM with Pixi #251: Commit c9273da pushed by wwood
2m 3s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
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test: Fix x-mapper one. Test CoverM with Pixi #250: Commit 7a641b2 pushed by wwood
2m 33s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
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Add dependency checks for x-mapper mapping program Test CoverM with Pixi #249: Commit d7fb2df pushed by wwood
2m 25s codex/add-external_command_checker-for-x-mapper
codex/add-external_command_checker-for-x-mapper
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pixi: update it. Test CoverM with Pixi #248: Commit 16a6003 pushed by wwood
2m 32s codex/add-external_command_checker-for-x-mapper
codex/add-external_command_checker-for-x-mapper
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test: Fix x-mapper one. Test CoverM with Pixi #247: Commit 7a641b2 pushed by wwood
2m 13s xmapper
xmapper
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