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1. spriggan spriggan Public

   Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.

   Python 16 3

2. dryad dryad Public

   Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.

   Groovy 18 5

3. ar_report_generator ar_report_generator Public

   AR Report Generator is used to render a report from the output of pipelines that identify antibiotic resistance (AR) genes and/or examine prokaryote relatedness in outbreaks

   Dockerfile 8 1

4. SPNtypeID SPNtypeID Public

   SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae.

   Python 3 1