Add deNBI logos and update contact details

CONTRIBUTING.md

@@ -43,6 +43,7 @@ Older versions of models should stay available to enable users to reproduce past
 3. **Make Your Changes**: Follow the project's coding standards and conventions.  
 4. **Test Your Changes**: Ensure your changes work as expected and don't introduce new issues.  
 5. **Submit a Pull Request (PR)**:  
+   - Open your PR for the dev branch.
    - Provide a clear and concise description of your changes.  
    - Reference related issues (e.g., “Closes #123”).  
    - Be responsive to feedback during the review process.  

clients/python/koinapy/grpc.py

@@ -96,7 +96,7 @@ def _is_server_ready(self):
                 if self.ssl:
                     raise InferenceServerException(
                         "The public koina network seems to be inaccessible at the moment. "
-                        "Please notify ludwig.lautenbacher@tum.de."
+                        "Please notify j.angelis@tum.de."
                     ) from e
                 else:
                     raise InferenceServerException(

web/components/partials/TheHeader.vue

@@ -72,7 +72,7 @@ onBeforeUnmount(() => {
           <nuxt-link id="btn-comp-spec" to="/compare-spectra"> Compare Spectra </nuxt-link>
         </li>
         <li>
-          <a id="contact-button" href="mailto:Ludwig.Lautenbacher@tum.de"> <IoMail/> </a>
+          <a id="contact-button" href="mailto:j.angelis@tum.de"> <IoMail/> </a>
         </li>
         <li>
           <nuxt-link to="https://github.com/wilhelm-lab/koina">

web/openapi/templates/openapi.yml

@@ -15,11 +15,11 @@ info:
     ```
     Koina: Democratizing machine learning for proteomics research  
     Ludwig Lautenbacher, Kevin L. Yang, Tobias Kockmann, et al.  
-    bioRxiv 2024.06.01.596953; doi: https://doi.org/10.1101/2024.06.01.596953
+    Nat Commun 16, 9933 (2025). https://doi.org/10.1038/s41467-025-64870-5
     ```
   version: 0.0.1
   contact:
-    email: Ludwig.Lautenbacher@tum.de
+    email: j.angelis@tum.de
 externalDocs:
   description: Koina GitHub
   url: https://github.com/wilhelm-lab/koina

web/pages/index.vue

@@ -89,7 +89,7 @@ onUnmounted(() => {
       <p>
         Koina is a community driven project. 
         It is fuly <a href="https://github.com/wilhelm-lab/koina">open-source</a>.
-        We welcome all contributions and feedback! Feel free to reach out to <a href="mailto:Ludwig.Lautenbacher@tum.de">us</a> or open an issue on our <a href="https://github.com/wilhelm-lab/koina/issues/new">GitHub repository</a>.
+        We welcome all contributions and feedback! Feel free to reach out to <a href="mailto:j.angelis@tum.de">us</a> or open an issue on our <a href="https://github.com/wilhelm-lab/koina/issues/new">GitHub repository</a>.
       </p>
 
       <p>
@@ -108,7 +108,7 @@ onUnmounted(() => {
           your Koina instance available via
           <a href="https://koina.wilhelmlab.org">koina.wilhelmlab.org</a>,
           please contact us via 
-          <a href="mailto:Ludwig.Lautenbacher@tum.de"
+          <a href="mailto:j.angelis@tum.de"
             >E-Mail</a
           >.
         </p>
@@ -143,6 +143,12 @@ onUnmounted(() => {
         <a href="https://www.upf.edu/" class="ml-2 mb-2">
           <img src="~/assets/img/upf-logo.png" alt="UPF logo" class="h-16" />
         </a>
+        <a href="https://www.denbi.de/" class="ml-2 mb-2">
+          <img src="~/assets/img/denbi-logo.svg" alt="DENBI logo" class="h-16" />
+        </a>
+        <a href="https://www.fz-juelich.de/en/ibg/ibg-5/research/data-science-and-bioinformatics-for-mass-spectrometry-of-small-molecules" class="ml-2 mb-2">
+          <img src="~/assets/img/fz-juelich-logo.svg" alt="FZ Juelich logo" class="h-16" />
+        </a>
       </div>
     </div>
   </div>