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Clarification between SoupX and souporcell for ambient RNA correction of cell-hash-tagged scRNAseq

Status: Open.

#267 In wheaton5/souporcell;

· denvercal1234GitHub opened on Jan 12, 2026

Variants that underlie genetic clusters

Status: Open.

#265 In wheaton5/souporcell;

· Sayyam-Shah opened on Dec 12, 2025

Provided Common Variants are Mostly Intergenic

Status: Open.

#264 In wheaton5/souporcell;

· DarioS opened on Nov 11, 2025

known_genotypes Implementation State Contradiction

Status: Open.

#263 In wheaton5/souporcell;

· DarioS opened on Nov 9, 2025

How to extract <code>souporcell</code> version for nf-core integration

Status: Open.

#262 In wheaton5/souporcell;

· LuisHeinzlmeier opened on Nov 6, 2025

souporcell3

Status: Open.

#261 In wheaton5/souporcell;

· bpuzek opened on Oct 30, 2025

Somewhat common retag error with line 24

Status: Open.

#259 In wheaton5/souporcell;

· NewtontheNeuron opened on Jul 23, 2025

shared_sample.py loss value zero

Status: Open.

#258 In wheaton5/souporcell;

· m21camby opened on Jul 10, 2025

unable to pull the image

Status: Open.

#256 In wheaton5/souporcell;

· Gphilps opened on Jun 5, 2025

running souporcell clustering error

Status: Open.

#255 In wheaton5/souporcell;

· m21camby opened on Jun 5, 2025

indexes of the cluster_allele_counts

Status: Open.

#254 In wheaton5/souporcell;

· hrehrauer opened on May 7, 2025

Very high ambient RNA detected

Status: Open.

#253 In wheaton5/souporcell;

· deepalivasoya opened on Mar 13, 2025