0.5.2

What's Changed

• Update SAM 2.1 optional dependency to pipy version of trackastra_pretrained_feats by @C-Achard in #51

Full Changelog: 0.5.1...0.5.2

0.5.1

What's Changed

• Fix dep syntax by @bentaculum in #50

Full Changelog: 0.5.0...0.5.1

0.5.0

What's Changed

• SAM2.1 Bacteria - Pre-trained features model release by @C-Achard in #39
• Update CLI by @bentaculum in #47
• Set pythonic default model download dir by @bentaculum in #49

New Contributors

• @C-Achard made their first contribution in #39

Full Changelog: 0.4.2...0.5.0

0.4.2

What's Changed

• Support empty windows+sequences in prediction by @bentaculum in #42
• Make installing dependencies for training optional by @bentaculum in #43

Full Changelog: 0.4.1...0.4.2

0.4.1

Update to GEFF v1 API

0.4.0

What's Changed

• Breaking change to python inference API: Trackastra.track now takes care of relabeling the segmentation masks to match IDs in the solution graph, which before was done only when converting to CTC format.
  Here is a minimal example of the new API:

  # load some test data images and masks
  imgs, masks = example_data_bacteria()
  
  # Load a pretrained model
  model = Trackastra.from_pretrained("general_2d", device=device)
  
  # or from a local folder
  # model = Trackastra.from_folder('path/my_model_folder/', device=device)
  
  # Track the cells
  track_graph, masks_tracked = model.track(imgs, masks, mode="greedy") 
  

• Add GEFF file format support in inference by @bentaculum in #34
• Support inference on large arrays with dask by @maweigert in #33
• Add batched inference by @bentaculum in #35
• Support intermediate empty frames in inference by @JojoDevel in #36

Full Changelog: 0.3.2...0.4.0

0.3.2

Full Changelog: 0.3.1...0.3.2

0.3.1

What's Changed

• Update setup.cfg file to install humanize package by @anwai98 in #30
• Add basic train test
• Add python 3.13 compatibility

Full Changelog: 0.3.0...0.3.1

0.3.0

What's Changed

• Remove verbosity argument in LRScheduler by @anwai98 in #27
• Update training, release new models by @bentaculum in #29

New Contributors

• @anwai98 made their first contribution in #27

Full Changelog: 0.2.4...0.3.0

0.2.4

Full Changelog: 0.2.3...0.2.4