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Releases: weigertlab/spotiflow

0.6.4

30 Jan 15:51

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  • Improve inference tiling to alleviate border effects.
  • Allow min_distance to be a floating point number.
  • Adjust min_distance automatically if model grid is greater than 1.
  • Added support for Python 3.14
  • CI refactor.

Full Changelog: 0.6.2...0.6.4

0.6.2

20 Nov 10:52

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  • Fix lazy normalization in prediction CLI
  • Faster sum mode for heatmap generation
  • Fix wrong data loading argumens in notebook examples (#48)
  • New artwork

Full Changelog: 0.6.1...0.6.2

0.6.1

19 Sep 14:47

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  • Disable MPS for 3D models

Full Changelog: 0.6.0...0.6.1

0.6.0

19 Sep 14:14

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  • Added new fluo_live model for single molecule tracking
  • Override sigma when fine-tuning trained models
  • Flexibilize CLI, more Zarr prediction options
  • Move model hosting to GitHub (#43).
  • Few minor bug fixing
    Full Changelog: 0.5.8...0.6.0

0.5.8

31 Jul 12:17
a3d1acb

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What's Changed

  • Added support for OME-Zarr prediction in CLI
  • Add --channels argument to training and prediction CLI for channel selection by @qin-yu in #39
  • Example notebook fix
  • Fix 3D Gaussian fit
  • Bump Windows version for CI

Full Changelog: 0.5.7...0.5.8

Bugfix: 3D multi-channel training

09 Jun 18:12

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  • Fix multi-channel 3D volume handling by @qin-yu in #34

New Contributors

Full Changelog: 0.5.6...0.5.7

Bugfix: multi-channel training

06 Jun 08:31

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  • Fixed bug causing multi-channel training not to work
  • Fixed bug where training crashed if an explicit SpotiflowTrainingConfig instance was passed as the train_params argument to the Spotiflow.fit() method.
  • Fixed tests.

Full Changelog: 0.5.5...0.5.6

0.5.5

22 May 11:14

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What's Changed

  • Remove verbosity argument in scheduler by @anwai98 in #30
  • better augmentation api;data loading by @maweigert in #29
  • fixed model 3d training argument
  • CLI defaults to point priority sampling for training

New Contributors

Full Changelog: 0.5.4...0.5.5

0.5.4

04 Mar 21:18

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  • Add support for numpy>=2.0 (#28)
  • Add support for Python 3.13

Full Changelog: 0.5.3...0.5.4

0.5.3

28 Feb 17:56

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  • Fixed #26, #27
  • Default default to more likely sampling of patches containing spots (at least 80% of them)
  • Added 2D+t sample data

Full Changelog: 0.5.2...0.5.3