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waldronlab / TCGAutils Public

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Restore mirToRanges functionality#36

Merged

LiNk-NY merged 12 commits intodevelwaldronlab/TCGAutils:develfrom

gff3waldronlab/TCGAutils:gff3Copy head branch name to clipboard

Nov 11, 2025

Conversation Commits12 (12)Checks Files changed

Merged

Restore mirToRanges functionality#36
LiNk-NY merged 12 commits intodevelfrom
gff3

Commits

Commits on Nov 10, 2025

restore use of mirToRanges
LiNk-NY
committed
create helper to identify viable assays
LiNk-NY
committed
use miRNAmeConverter to translate and map miRNA IDs
LiNk-NY
committed
update authors in simplifyTCGA
LiNk-NY
committed
check for Bioc.gff installation in mirToRanges
LiNk-NY
committed
fix .getRangesOfMir check
LiNk-NY
committed
use default "hg19" for .get_hsa_gff3
LiNk-NY
committed

Commits on Nov 11, 2025

match tolower for rowIdx
LiNk-NY
committed
separate .makeMiRNAListRanges from .makeListRanges
LiNk-NY
committed
simplify and use rowidx for mcols col
LiNk-NY
committed
use assay instead of x[[i]]
LiNk-NY
committed
use utils::tail
LiNk-NY
committed

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