VAI BBC
- 9 followers
- Grand Rapids, Michigan
- https://bioinformaticsandbiostatisticscore.vai.org/
- bbc@vai.org
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rnaseq_workflow
rnaseq_workflow Publicsnakemake workflow for bulk RNA-seq workflow using STAR-edgeR
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Biscuit_Snakemake_Workflow
Biscuit_Snakemake_Workflow Public archiveSnakemake Workflow For WGBS Data
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piwi_RNA_pipeline
piwi_RNA_pipeline PublicScripts for heirarchical assignment of reads to feature biotypes
Perl 1
Repositories
- CUT-Tag-workflow Public
This workflow performs trimming, alignment, and generates BigWig and BED files for CUT&Tag data. The workflow is optimized for the HPC environment at Van Andel Institute, but it can be easily modified for general use on other systems.
vari-bbc/CUT-Tag-workflow’s past year of commit activity - prep_bbc_shared Public
Pipeline for preparing shared resources such as aligner index files in the BBC.
vari-bbc/prep_bbc_shared’s past year of commit activity - Social_distancing_and_activity_analysis Public
R code to analyze social distancing and activity analyses of drosophila. Current implementation utilizes control mutants to establish null intervals for use with a second generation p-values. Activity data are analyzed using PC regression.
vari-bbc/Social_distancing_and_activity_analysis’s past year of commit activity - demultiplex Public
vari-bbc/demultiplex’s past year of commit activity - Nauta_2025 Public
vari-bbc/Nauta_2025’s past year of commit activity - snakemake_template Public template
vari-bbc/snakemake_template’s past year of commit activity - bioinfo_workshop_2025 Public
vari-bbc/bioinfo_workshop_2025’s past year of commit activity - nextflow_template Public template
vari-bbc/nextflow_template’s past year of commit activity - Intro_to_Linux_for_HPC Public
vari-bbc/Intro_to_Linux_for_HPC’s past year of commit activity
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