This repository contains code for analysing Hi-C data from Diaz et al. 2018 (workflow/Snakefile) and data from Rao et al. 2014 and
Wutz et al. 2017. obtained from the 4D Nucleome website (workflow/4dn.smk). These are set up as separate Snakemake workflows for ease of data processing.
The file scripts/figures.Rmd contains R code to generate most figures. Hi-C visualisations were generated using FAN-C and the python scripts in scripts/.
The .html output file with figures can be viewed here.